Detailed information of SNP:
|
SNP ID:
sf0401783510(Gbrowse)
Chromosome: chr04 Position: 1783510 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1193 | 77.28% | 22.72% |
| All Indica | 619 | 72.37% | 27.63% |
| All Japonica | 469 | 84.22% | 15.78% |
| Aus | 57 | 73.68% | 26.32% |
| Indica I | 275 | 80.36% | 19.64% |
| Indica II | 175 | 53.71% | 46.29% |
| Indica Intermediate | 169 | 78.70% | 21.30% |
| Temperate Japonica | 318 | 98.74% | 1.26% |
| Tropical Japonica | 85 | 30.59% | 69.41% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401783510 | A->G | INTERGENIC | None |