Detailed information of SNP:
|
SNP ID:
sf0401790844(Gbrowse)
Chromosome: chr04 Position: 1790844 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 92.49% | 7.51% |
| All Indica | 783 | 89.14% | 10.86% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 369 | 90.79% | 9.21% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401790844 | T->G | INTERGENIC | None |