Detailed information of SNP:
|
SNP ID:
sf0401794032(Gbrowse)
Chromosome: chr04 Position: 1794032 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1252 | 55.19% | 44.81% |
| All Indica | 711 | 78.20% | 21.80% |
| All Japonica | 436 | 12.16% | 87.84% |
| Aus | 57 | 80.70% | 19.30% |
| Indica I | 336 | 88.69% | 11.31% |
| Indica II | 183 | 66.12% | 33.88% |
| Indica Intermediate | 192 | 71.35% | 28.65% |
| Temperate Japonica | 328 | 7.93% | 92.07% |
| Tropical Japonica | 47 | 10.64% | 89.36% |
| Japonica Intermediate | 61 | 36.07% | 63.93% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401794032 | C->T | LOC_Os04g03940(LOC_Os04g03940.1) | INTRON |