Detailed information of SNP:
|
SNP ID:
sf0401794073(Gbrowse)
Chromosome: chr04 Position: 1794073 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 55.97% | 44.03% |
| All Indica | 747 | 35.88% | 64.12% |
| All Japonica | 488 | 90.98% | 9.02% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 353 | 28.61% | 71.39% |
| Indica II | 198 | 45.45% | 54.55% |
| Indica Intermediate | 196 | 39.29% | 60.71% |
| Temperate Japonica | 329 | 93.62% | 6.38% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401794073 | C->T | LOC_Os04g03940(LOC_Os04g03940.1) | INTRON |