Detailed information of SNP:
|
SNP ID:
sf0401796070(Gbrowse)
Chromosome: chr04 Position: 1796070 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 78.68% | 21.32% |
| All Indica | 793 | 96.09% | 3.91% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 25.67% | 74.33% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401796070 | T->C | LOC_Os04g03940(LOC_Os04g03940.1) | Non-Synonymous SNP |