Detailed information of SNP:
|
SNP ID:
sf0401797096(Gbrowse)
Chromosome: chr04 Position: 1797096 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 93.18% | 6.82% |
| All Indica | 761 | 89.09% | 10.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 355 | 90.14% | 9.86% |
| Indica II | 202 | 86.63% | 13.37% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401797096 | C->T | INTERGENIC | None |