Detailed information of SNP:
|
SNP ID:
sf0401801445(Gbrowse)
Chromosome: chr04 Position: 1801445 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 97.49% | 2.51% |
| All Indica | 778 | 96.27% | 3.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 365 | 96.44% | 3.56% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401801445 | C->A | INTERGENIC | None |