Detailed information of SNP:
|
SNP ID:
sf0401813320(Gbrowse)
Chromosome: chr04 Position: 1813320 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 87.33% | 12.67% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 492 | 82.32% | 17.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 330 | 94.24% | 5.76% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401813320 | G->A | INTERGENIC | None |