Detailed information of SNP:
|
SNP ID:
sf0401876978(Gbrowse)
Chromosome: chr04 Position: 1876978 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 57.43% | 42.57% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 487 | 9.86% | 90.14% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 325 | 2.46% | 97.54% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401876978 | C->T | INTERGENIC | None |