Detailed information of SNP:



SNP ID: sf0401891245(Gbrowse)

Chromosome: chr04

Position: 1891245
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 86.91% 13.09%
All Indica797 98.75% 1.25%
All Japonica494 68.02% 31.98%
Aus67 92.54% 7.46%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate209 95.22% 4.78%
Temperate Japonica333 62.76% 37.24%
Tropical Japonica93 83.87% 16.13%
Japonica Intermediate68 72.06% 27.94%
Group VI/Aromatic13 46.15% 53.85%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0401891245 C->T INTERGENIC None