Detailed information of SNP:
|
SNP ID:
sf0401891245(Gbrowse)
Chromosome: chr04 Position: 1891245 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 86.91% | 13.09% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 494 | 68.02% | 31.98% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 333 | 62.76% | 37.24% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401891245 | C->T | INTERGENIC | None |