Detailed information of SNP:
|
SNP ID:
sf0401909073(Gbrowse)
Chromosome: chr04 Position: 1909073 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 94.98% | 5.02% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 492 | 87.40% | 12.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 330 | 81.52% | 18.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401909073 | T->C | INTERGENIC | None |