Detailed information of SNP:
|
SNP ID:
sf0401911048(Gbrowse)
Chromosome: chr04 Position: 1911048 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 62.10% | 37.90% |
| All Indica | 782 | 37.98% | 62.02% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 362 | 22.65% | 77.35% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401911048 | G->A | INTERGENIC | None |