Detailed information of SNP:
|
SNP ID:
sf0401943680(Gbrowse)
Chromosome: chr04 Position: 1943680 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.76% | 21.24% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 496 | 48.19% | 51.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 55.82% | 44.18% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401943680 | C->T | INTERGENIC | None |