Detailed information of SNP:
|
SNP ID:
sf0401958525(Gbrowse)
Chromosome: chr04 Position: 1958525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.15% | 5.85% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401958525 | C->T | INTERGENIC | None |