Detailed information of SNP:
|
SNP ID:
sf0401967742(Gbrowse)
Chromosome: chr04 Position: 1967742 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 799 | 64.58% | 35.42% |
| All Japonica | 497 | 55.13% | 44.87% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401967742 | C->T | INTERGENIC | None |