Detailed information of SNP:
|
SNP ID:
sf0402011950(Gbrowse)
Chromosome: chr04 Position: 2011950 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 90.29% | 9.71% |
| All Indica | 780 | 86.79% | 13.21% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 90.68% | 9.32% |
| Indica II | 208 | 79.81% | 20.19% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402011950 | C->T | INTERGENIC | None |