Detailed information of SNP:
|
SNP ID:
sf0402015564(Gbrowse)
Chromosome: chr04 Position: 2015564 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.49% | 10.51% |
| All Indica | 798 | 86.34% | 13.66% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402015564 | G->A | LOC_Os04g04320(LOC_Os04g04320.1) | INTRON |
| sf0402015564 | G->A | LOC_Os04g04320(LOC_Os04g04320.2) | INTRON |