Detailed information of SNP:
|
SNP ID:
sf0402025086(Gbrowse)
Chromosome: chr04 Position: 2025086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.03% | 12.97% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402025086 | G->A | INTERGENIC | None |