Detailed information of SNP:
|
SNP ID:
sf0402025702(Gbrowse)
Chromosome: chr04 Position: 2025702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.69% | 36.31% |
| All Indica | 798 | 41.48% | 58.52% |
| All Japonica | 492 | 93.29% | 6.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 28.34% | 71.66% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402025702 | C->T | INTERGENIC | None |