Detailed information of SNP:
|
SNP ID:
sf0402028542(Gbrowse)
Chromosome: chr04 Position: 2028542 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.91% | 46.09% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402028542 | C->T | INTERGENIC | None |