Detailed information of SNP:
|
SNP ID:
sf0402044404(Gbrowse)
Chromosome: chr04 Position: 2044404 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.53% | 49.47% |
| All Indica | 797 | 19.07% | 80.93% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402044404 | C->A | INTERGENIC | None |