Detailed information of SNP:
|
SNP ID:
sf0402044407(Gbrowse)
Chromosome: chr04 Position: 2044407 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 61.63% | 38.37% |
| All Indica | 794 | 81.49% | 18.51% |
| All Japonica | 486 | 26.34% | 73.66% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 328 | 7.32% | 92.68% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402044407 | T->C | INTERGENIC | None |