Detailed information of SNP:
|
SNP ID:
sf0402046908(Gbrowse)
Chromosome: chr04 Position: 2046908 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.77% | 30.23% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402046908 | A->G | INTERGENIC | None |