Detailed information of SNP:
|
SNP ID:
sf0402049339(Gbrowse)
Chromosome: chr04 Position: 2049339 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 88.16% | 11.84% |
| All Indica | 799 | 82.60% | 17.40% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402049339 | C->A | INTERGENIC | None |