Detailed information of SNP:
|
SNP ID:
sf0402054785(Gbrowse)
Chromosome: chr04 Position: 2054785 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 55.71% | 44.29% |
| All Indica | 791 | 84.45% | 15.55% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 205 | 63.41% | 36.59% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402054785 | G->A | INTERGENIC | None |