Detailed information of SNP:
|
SNP ID:
sf0402057550(Gbrowse)
Chromosome: chr04 Position: 2057550 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 87.21% | 12.79% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 66.13% | 33.87% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 67.66% | 32.34% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402057550 | T->C | INTERGENIC | None |