Detailed information of SNP:
|
SNP ID:
sf0402058228(Gbrowse)
Chromosome: chr04 Position: 2058228 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 58.42% | 41.58% |
| All Indica | 796 | 77.76% | 22.24% |
| All Japonica | 489 | 21.06% | 78.94% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 68.80% | 31.20% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 209 | 81.82% | 18.18% |
| Temperate Japonica | 333 | 18.62% | 81.38% |
| Tropical Japonica | 88 | 38.64% | 61.36% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402058228 | T->C | INTERGENIC | None |