Detailed information of SNP:
|
SNP ID:
sf0402063599(Gbrowse)
Chromosome: chr04 Position: 2063599 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 96.83% | 3.17% |
| All Indica | 780 | 96.15% | 3.85% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402063599 | T->C | INTERGENIC | None |