Detailed information of SNP:
|
SNP ID:
sf0402088806(Gbrowse)
Chromosome: chr04 Position: 2088806 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 77.39% | 22.61% |
| All Indica | 777 | 86.62% | 13.38% |
| All Japonica | 493 | 60.45% | 39.55% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 361 | 82.55% | 17.45% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 334 | 48.80% | 51.20% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402088806 | T->C | LOC_Os04g04400(LOC_Os04g04400.1) | INTRON |