Detailed information of SNP:
|
SNP ID:
sf0402096304(Gbrowse)
Chromosome: chr04 Position: 2096304 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1235 | 62.75% | 37.25% |
| All Indica | 642 | 39.25% | 60.75% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 52 | 61.54% | 38.46% |
| Indica I | 292 | 37.33% | 62.67% |
| Indica II | 178 | 36.52% | 63.48% |
| Indica Intermediate | 172 | 45.35% | 54.65% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 88 | 70.45% | 29.55% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402096304 | G->A | LOC_Os04g04410(LOC_Os04g04410.1) | Synonymous |