Detailed information of SNP:
|
SNP ID:
sf0402099515(Gbrowse)
Chromosome: chr04 Position: 2099515 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 85.02% | 14.98% |
| All Indica | 739 | 78.48% | 21.52% |
| All Japonica | 487 | 94.66% | 5.34% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 350 | 88.86% | 11.14% |
| Indica II | 190 | 60.53% | 39.47% |
| Indica Intermediate | 199 | 77.39% | 22.61% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 77.01% | 22.99% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402099515 | T->C | LOC_Os04g04420(LOC_Os04g04420.1) | Non-Synonymous SNP |