Detailed information of SNP:
|
SNP ID:
sf0402100545(Gbrowse)
Chromosome: chr04 Position: 2100545 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 92.72% | 7.28% |
| All Indica | 766 | 92.56% | 7.44% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 61 | 39.34% | 60.66% |
| Indica I | 353 | 90.93% | 9.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 200 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402100545 | T->C | LOC_Os04g04420(LOC_Os04g04420.1) | Non-Synonymous SNP |