Detailed information of SNP:
|
SNP ID:
sf0402101161(Gbrowse)
Chromosome: chr04 Position: 2101161 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 55.79% | 44.21% |
| All Indica | 739 | 35.45% | 64.55% |
| All Japonica | 488 | 92.83% | 7.17% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 344 | 34.88% | 65.12% |
| Indica II | 197 | 30.96% | 69.04% |
| Indica Intermediate | 198 | 40.91% | 59.09% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 64.77% | 35.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402101161 | T->C | LOC_Os04g04420(LOC_Os04g04420.1) | INTRON |