Detailed information of SNP:
|
SNP ID:
sf0402106845(Gbrowse)
Chromosome: chr04 Position: 2106845 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1324 | 65.11% | 34.89% |
| All Indica | 736 | 62.91% | 37.09% |
| All Japonica | 478 | 72.80% | 27.20% |
| Aus | 58 | 43.10% | 56.90% |
| Indica I | 341 | 73.31% | 26.69% |
| Indica II | 200 | 64.00% | 36.00% |
| Indica Intermediate | 195 | 43.59% | 56.41% |
| Temperate Japonica | 330 | 75.76% | 24.24% |
| Tropical Japonica | 82 | 62.20% | 37.80% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402106845 | T->C | LOC_Os04g04430(LOC_Os04g04430.1) | Non-Synonymous SNP |