Detailed information of SNP:
|
SNP ID:
sf0402107041(Gbrowse)
Chromosome: chr04 Position: 2107041 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 83.10% | 16.90% |
| All Indica | 786 | 89.31% | 10.69% |
| All Japonica | 493 | 71.60% | 28.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 201 | 78.11% | 21.89% |
| Temperate Japonica | 332 | 66.57% | 33.43% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402107041 | A->G | LOC_Os04g04430(LOC_Os04g04430.1) | INTRON |