Detailed information of SNP:
|
SNP ID:
sf0402107426(Gbrowse)
Chromosome: chr04 Position: 2107426 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 90.01% | 9.99% |
| All Indica | 793 | 95.33% | 4.67% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402107426 | A->G | LOC_Os04g04430(LOC_Os04g04430.1) | Synonymous |