Detailed information of SNP:
|
SNP ID:
sf0402127373(Gbrowse)
Chromosome: chr04 Position: 2127373 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 86.58% | 13.42% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402127373 | T->C | LOC_Os04g04480(LOC_Os04g04480.1) | INTRON |