Detailed information of SNP:
|
SNP ID:
sf0402147135(Gbrowse)
Chromosome: chr04 Position: 2147135 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 90.74% | 9.26% |
| All Indica | 789 | 87.33% | 12.67% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402147135 | T->G | INTERGENIC | None |