Detailed information of SNP:
|
SNP ID:
sf0402154483(Gbrowse)
Chromosome: chr04 Position: 2154483 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 93.42% | 6.58% |
| All Indica | 796 | 89.07% | 10.93% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402154483 | G->A | LOC_Os04g04510(LOC_Os04g04510.1) | SNPs that introduce stop codons |