Detailed information of SNP:
|
SNP ID:
sf0402155882(Gbrowse)
Chromosome: chr04 Position: 2155882 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 62.85% | 37.15% |
| All Indica | 736 | 51.90% | 48.10% |
| All Japonica | 490 | 75.92% | 24.08% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 328 | 69.21% | 30.79% |
| Indica II | 207 | 43.48% | 56.52% |
| Indica Intermediate | 201 | 32.34% | 67.66% |
| Temperate Japonica | 331 | 84.29% | 15.71% |
| Tropical Japonica | 91 | 67.03% | 32.97% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402155882 | T->A | LOC_Os04g04510(LOC_Os04g04510.1) | Synonymous |