Detailed information of SNP:
|
SNP ID:
sf0402159276(Gbrowse)
Chromosome: chr04 Position: 2159276 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 63.99% | 36.01% |
| All Indica | 772 | 88.08% | 11.92% |
| All Japonica | 482 | 20.33% | 79.67% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 359 | 84.12% | 15.88% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 327 | 14.98% | 85.02% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402159276 | A->C | INTERGENIC | None |