Detailed information of SNP:
|
SNP ID:
sf0402163663(Gbrowse)
Chromosome: chr04 Position: 2163663 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 94.93% | 5.07% |
| All Indica | 740 | 92.57% | 7.43% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 53 | 84.91% | 15.09% |
| Indica I | 361 | 95.57% | 4.43% |
| Indica II | 184 | 88.59% | 11.41% |
| Indica Intermediate | 195 | 90.77% | 9.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402163663 | C->T | LOC_Os04g04530(LOC_Os04g04530.1) | Synonymous |