Detailed information of SNP:
|
SNP ID:
sf0402168131(Gbrowse)
Chromosome: chr04 Position: 2168131 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 69.70% | 30.30% |
| All Indica | 791 | 97.22% | 2.78% |
| All Japonica | 474 | 18.35% | 81.65% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 325 | 5.23% | 94.77% |
| Tropical Japonica | 86 | 63.95% | 36.05% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402168131 | G->A | LOC_Os04g04540(LOC_Os04g04540.1) | Non-Synonymous SNP |