Detailed information of SNP:
|
SNP ID:
sf0402168137(Gbrowse)
Chromosome: chr04 Position: 2168137 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 68.88% | 31.12% |
| All Indica | 786 | 95.29% | 4.71% |
| All Japonica | 479 | 19.62% | 80.38% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 370 | 94.86% | 5.14% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 325 | 5.54% | 94.46% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 64 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402168137 | C->T | LOC_Os04g04540(LOC_Os04g04540.1) | Non-Synonymous SNP |