Detailed information of SNP:
|
SNP ID:
sf0402168191(Gbrowse)
Chromosome: chr04 Position: 2168191 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 72.58% | 27.42% |
| All Indica | 794 | 97.61% | 2.39% |
| All Japonica | 478 | 25.94% | 74.06% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 324 | 15.74% | 84.26% |
| Tropical Japonica | 88 | 65.91% | 34.09% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402168191 | G->T | LOC_Os04g04540(LOC_Os04g04540.1) | Non-Synonymous SNP |