Detailed information of SNP:
|
SNP ID:
sf0402168235(Gbrowse)
Chromosome: chr04 Position: 2168235 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 67.92% | 32.08% |
| All Indica | 795 | 96.98% | 3.02% |
| All Japonica | 488 | 15.98% | 84.02% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402168235 | C->G | LOC_Os04g04540(LOC_Os04g04540.1) | INTRON |