Detailed information of SNP:
|
SNP ID:
sf0402175325(Gbrowse)
Chromosome: chr04 Position: 2175325 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 94.09% | 5.91% |
| All Indica | 732 | 90.71% | 9.29% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 57 | 87.72% | 12.28% |
| Indica I | 349 | 95.13% | 4.87% |
| Indica II | 189 | 87.83% | 12.17% |
| Indica Intermediate | 194 | 85.57% | 14.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402175325 | A->C | LOC_Os04g04550(LOC_Os04g04550.1) | Synonymous |