Detailed information of SNP:
|
SNP ID:
sf0402175471(Gbrowse)
Chromosome: chr04 Position: 2175471 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 96.83% | 3.17% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 478 | 95.82% | 4.18% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 321 | 96.26% | 3.74% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402175471 | T->C | LOC_Os04g04550(LOC_Os04g04550.1) | Non-Synonymous SNP |