Detailed information of SNP:
|
SNP ID:
sf0402175487(Gbrowse)
Chromosome: chr04 Position: 2175487 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1309 | 52.48% | 47.52% |
| All Indica | 720 | 75.69% | 24.31% |
| All Japonica | 477 | 11.53% | 88.47% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 329 | 69.00% | 31.00% |
| Indica II | 197 | 84.77% | 15.23% |
| Indica Intermediate | 194 | 77.84% | 22.16% |
| Temperate Japonica | 331 | 2.72% | 97.28% |
| Tropical Japonica | 81 | 49.38% | 50.62% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 35 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402175487 | C->T | LOC_Os04g04550(LOC_Os04g04550.1) | Synonymous |