Detailed information of SNP:
|
SNP ID:
sf0402176361(Gbrowse)
Chromosome: chr04 Position: 2176361 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 72.32% | 27.68% |
| All Indica | 786 | 90.20% | 9.80% |
| All Japonica | 464 | 37.72% | 62.28% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 86.10% | 13.90% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 317 | 18.93% | 81.07% |
| Tropical Japonica | 87 | 90.80% | 9.20% |
| Japonica Intermediate | 60 | 60.00% | 40.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402176361 | A->G | LOC_Os04g04560(LOC_Os04g04560.1) | Synonymous |